Genetic relatedness analysis of Nocardia strains by random amplification polymorphic DNA: validation and applications
Identifieur interne : 001100 ( France/Analysis ); précédent : 001099; suivant : 001101Genetic relatedness analysis of Nocardia strains by random amplification polymorphic DNA: validation and applications
Auteurs : Frédéric Laurent [France] ; Frédérique Provost [France] ; Andrée Couble [France] ; Emmanuelle Casoli [France] ; Patrick Boiron [France]Source :
- Research in Microbiology [ 0923-2508 ] ; 2000.
English descriptors
- KwdEn :
Abstract
Until now, no simple and rapid technique existed for epidemiological study of strains belonging to the Nocardia genus. The application of the arbitrarily primed PCR procedure to generate randomly amplified polymorphic DNA (RAPD) fingerprints for such analysis of Nocardia isolates was investigated. Fifty-one unrelated clinical isolates of N. asteroides were tested. Two conditions of RAPD using two different primers generated RAPD fingerprints that allowed the differentiation of all strains. The patterns were reproducible and discriminating. The results highlight the diversity of N. asteroides species and confirm that RAPD analysis is a highly valuable tool for studying the epidemiology of the Nocardia genus. Several examples describe the advantage of RAPD analysis for establishing the relationship between isolates from a given patient (long-term infections, coinfections) and from different patients (i.e. during an outbreak). In the future, this technique will help us to investigate the source of infection in cases of nosocomial transmission, to understand the outcome of nocardiosis, and to follow the evolution and acquisition of resistance to Nocardia strains.
Url:
DOI: 10.1016/S0923-2508(00)00152-2
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 001113
- to stream Istex, to step Curation: 001113
- to stream Istex, to step Checkpoint: 000992
- to stream Main, to step Merge: 001A01
- to stream Main, to step Curation: 001954
- to stream Main, to step Exploration: 001954
- to stream France, to step Extraction: 001100
Links to Exploration step
ISTEX:E6E44CC653273BACD40A4DD03A26A2CA12BF36C2Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic relatedness analysis of Nocardia strains by random amplification polymorphic DNA: validation and applications</title>
<author><name sortKey="Laurent, Frederic" sort="Laurent, Frederic" uniqKey="Laurent F" first="Frédéric" last="Laurent">Frédéric Laurent</name>
</author>
<author><name sortKey="Provost, Frederique" sort="Provost, Frederique" uniqKey="Provost F" first="Frédérique" last="Provost">Frédérique Provost</name>
</author>
<author><name sortKey="Couble, Andree" sort="Couble, Andree" uniqKey="Couble A" first="Andrée" last="Couble">Andrée Couble</name>
</author>
<author><name sortKey="Casoli, Emmanuelle" sort="Casoli, Emmanuelle" uniqKey="Casoli E" first="Emmanuelle" last="Casoli">Emmanuelle Casoli</name>
</author>
<author><name sortKey="Boiron, Patrick" sort="Boiron, Patrick" uniqKey="Boiron P" first="Patrick" last="Boiron">Patrick Boiron</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:E6E44CC653273BACD40A4DD03A26A2CA12BF36C2</idno>
<date when="2000" year="2000">2000</date>
<idno type="doi">10.1016/S0923-2508(00)00152-2</idno>
<idno type="url">https://api.istex.fr/document/E6E44CC653273BACD40A4DD03A26A2CA12BF36C2/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">001113</idno>
<idno type="wicri:Area/Istex/Curation">001113</idno>
<idno type="wicri:Area/Istex/Checkpoint">000992</idno>
<idno type="wicri:doubleKey">0923-2508:2000:Laurent F:genetic:relatedness:analysis</idno>
<idno type="wicri:Area/Main/Merge">001A01</idno>
<idno type="wicri:Area/Main/Curation">001954</idno>
<idno type="wicri:Area/Main/Exploration">001954</idno>
<idno type="wicri:Area/France/Extraction">001100</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Genetic relatedness analysis of Nocardia strains by random amplification polymorphic DNA: validation and applications</title>
<author><name sortKey="Laurent, Frederic" sort="Laurent, Frederic" uniqKey="Laurent F" first="Frédéric" last="Laurent">Frédéric Laurent</name>
<affiliation wicri:level="1"><country wicri:rule="url">France</country>
</affiliation>
<affiliation wicri:level="3"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de bactériologie, UMR CNRS 5558, Faculté de médecine Lyon-Sud, BP12, 69921 Oullins</wicri:regionArea>
<placeName><region type="region" nuts="2">Auvergne-Rhône-Alpes</region>
<region type="old region" nuts="2">Rhône-Alpes</region>
<settlement type="city">Oullins</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Provost, Frederique" sort="Provost, Frederique" uniqKey="Provost F" first="Frédérique" last="Provost">Frédérique Provost</name>
<affiliation wicri:level="1"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de bactériologie, UMR CNRS 5558, Faculté de médecine Lyon-Sud, BP12, 69921 Oullins, FranceLaboratoire de mycologie fondamentale et appliquée aux biotechnologies industrielles, E.A 1655, Institut des sciences pharmaceutiques et biologiques de Lyon, 69373 Lyon, cedex 8</wicri:regionArea>
<wicri:noRegion>cedex 8</wicri:noRegion>
<wicri:noRegion>cedex 8</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Couble, Andree" sort="Couble, Andree" uniqKey="Couble A" first="Andrée" last="Couble">Andrée Couble</name>
<affiliation wicri:level="1"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de mycologie fondamentale et appliquée aux biotechnologies industrielles, E.A 1655, Institut des sciences pharmaceutiques et biologiques de Lyon, 69373 Lyon, cedex 8</wicri:regionArea>
<wicri:noRegion>cedex 8</wicri:noRegion>
<wicri:noRegion>cedex 8</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Casoli, Emmanuelle" sort="Casoli, Emmanuelle" uniqKey="Casoli E" first="Emmanuelle" last="Casoli">Emmanuelle Casoli</name>
<affiliation wicri:level="1"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de mycologie fondamentale et appliquée aux biotechnologies industrielles, E.A 1655, Institut des sciences pharmaceutiques et biologiques de Lyon, 69373 Lyon, cedex 8</wicri:regionArea>
<wicri:noRegion>cedex 8</wicri:noRegion>
<wicri:noRegion>cedex 8</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Boiron, Patrick" sort="Boiron, Patrick" uniqKey="Boiron P" first="Patrick" last="Boiron">Patrick Boiron</name>
<affiliation wicri:level="1"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire de mycologie fondamentale et appliquée aux biotechnologies industrielles, E.A 1655, Institut des sciences pharmaceutiques et biologiques de Lyon, 69373 Lyon, cedex 8</wicri:regionArea>
<wicri:noRegion>cedex 8</wicri:noRegion>
<wicri:noRegion>cedex 8</wicri:noRegion>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j">Research in Microbiology</title>
<title level="j" type="abbrev">RESMIC</title>
<idno type="ISSN">0923-2508</idno>
<imprint><publisher>ELSEVIER</publisher>
<date type="published" when="2000">2000</date>
<biblScope unit="volume">151</biblScope>
<biblScope unit="issue">4</biblScope>
<biblScope unit="page" from="263">263</biblScope>
<biblScope unit="page" to="270">270</biblScope>
</imprint>
<idno type="ISSN">0923-2508</idno>
</series>
<idno type="istex">E6E44CC653273BACD40A4DD03A26A2CA12BF36C2</idno>
<idno type="DOI">10.1016/S0923-2508(00)00152-2</idno>
<idno type="PII">S0923-2508(00)00152-2</idno>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0923-2508</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Nocardia</term>
<term>PCR, polymerase chain reaction</term>
<term>PFGE, pulsed field gel electrophoresis</term>
<term>RAPD</term>
<term>RAPD, random amplified polymorphic DNA</term>
<term>RFLP, restriction fragment length polymorphism</term>
<term>UPGMA, unweighted pair group method OD average</term>
<term>epidemiology</term>
<term>genotyping</term>
</keywords>
</textClass>
<langUsage><language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Until now, no simple and rapid technique existed for epidemiological study of strains belonging to the Nocardia genus. The application of the arbitrarily primed PCR procedure to generate randomly amplified polymorphic DNA (RAPD) fingerprints for such analysis of Nocardia isolates was investigated. Fifty-one unrelated clinical isolates of N. asteroides were tested. Two conditions of RAPD using two different primers generated RAPD fingerprints that allowed the differentiation of all strains. The patterns were reproducible and discriminating. The results highlight the diversity of N. asteroides species and confirm that RAPD analysis is a highly valuable tool for studying the epidemiology of the Nocardia genus. Several examples describe the advantage of RAPD analysis for establishing the relationship between isolates from a given patient (long-term infections, coinfections) and from different patients (i.e. during an outbreak). In the future, this technique will help us to investigate the source of infection in cases of nosocomial transmission, to understand the outcome of nocardiosis, and to follow the evolution and acquisition of resistance to Nocardia strains.</div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
</country>
<region><li>Auvergne-Rhône-Alpes</li>
<li>Rhône-Alpes</li>
</region>
<settlement><li>Oullins</li>
</settlement>
</list>
<tree><country name="France"><noRegion><name sortKey="Laurent, Frederic" sort="Laurent, Frederic" uniqKey="Laurent F" first="Frédéric" last="Laurent">Frédéric Laurent</name>
</noRegion>
<name sortKey="Boiron, Patrick" sort="Boiron, Patrick" uniqKey="Boiron P" first="Patrick" last="Boiron">Patrick Boiron</name>
<name sortKey="Casoli, Emmanuelle" sort="Casoli, Emmanuelle" uniqKey="Casoli E" first="Emmanuelle" last="Casoli">Emmanuelle Casoli</name>
<name sortKey="Couble, Andree" sort="Couble, Andree" uniqKey="Couble A" first="Andrée" last="Couble">Andrée Couble</name>
<name sortKey="Laurent, Frederic" sort="Laurent, Frederic" uniqKey="Laurent F" first="Frédéric" last="Laurent">Frédéric Laurent</name>
<name sortKey="Provost, Frederique" sort="Provost, Frederique" uniqKey="Provost F" first="Frédérique" last="Provost">Frédérique Provost</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/France/explor/LeHavreV1/Data/France/Analysis
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001100 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/France/Analysis/biblio.hfd -nk 001100 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/France |area= LeHavreV1 |flux= France |étape= Analysis |type= RBID |clé= ISTEX:E6E44CC653273BACD40A4DD03A26A2CA12BF36C2 |texte= Genetic relatedness analysis of Nocardia strains by random amplification polymorphic DNA: validation and applications }}
This area was generated with Dilib version V0.6.25. |